species:   Rhsol
pid:       PID0506
parent:    Rhi-milR-143
paralog:   
locus:     KB317843.1:7809-7903
matures:   ['UGGGAGUAGAAGAGAUUGAAAGU', 'GCCCAGUCCUUAACUUCUUUG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317843.1:7809-7903

7 out of bounds
31 alignments
13 proper strand
12 stranded perfect matches

      ************************                              **************************         
AAGGUACGCGCCCAGUCCUUAACUUCUUUGUUGGUUCGACAUAUAACUAAAAGACCUUCGCCUGGGAGUAGAAGAGAUUGAAAGUGUUUCACCUG
.((((((((...((((((((.((((((.((..((((................))))..))...))))))..))).)))))...))))...)))).
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGU---------- l=23 a=1 c
---------GCCCAGUCCUUAACUUCUUUG----------------------------------------------------------------- l=21 a=0 c*
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGUG--------- l=24 a=6 ma
--------CGCCCAGUCCUUAACUUCUUUG----------------------------------------------------------------- l=22 a=0 ma*

----------CCCAGUCCUUAACUUCUUUGUUGG------------------------------------------------------------- l=24 a=1 
------------CAGUCCUUAACUUCUUUGUUGG------------------------------------------------------------- l=22 a=1 
--------------------------------------------------AAGACCUUCGCCUGGGAGUAGAAG--------------------- l=24 a=1 
------------------------------------------------------------CCUGGGAGUAGAAGAGAUUGAAAG----------- l=24 a=1 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAG----------- l=22 a=1 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGa---------- l=23 a=1 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGU---------- l=23 a=1 (c)
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGUG--------- l=24 a=6 (ma)

mb-01111
ax-1001011
ku-01
ss-111110001000
fn-101
